Tag Archives: SIGNAL PROCESSING

Wavelet & Biomedical Imaging Tutorials

Recent Advances in Biomedical Imaging and Signal Analysis

M. Unser slide Proceedings of the Eighteenth European Signal Processing Conference (EUSIPCO’10), Ålborg, Denmark, August 23-27, 2010, EURASIP Fellow inaugural lecture.

Wavelets have the remarkable property of providing sparse representations of a wide variety of “natural” images. They have been applied successfully to biomedical image analysis and processing since the early 1990s.

In the first part of this talk, we explain how one can exploit the sparsifying property of wavelets to design more effective algorithms for image denoising and reconstruction, both in terms of quality and computational performance. This is achieved within a variational framework by imposing some ?1-type regularization in the wavelet domain, which favors sparse solutions. We discuss some corresponding iterative skrinkage-thresholding algorithms (ISTA) for sparse signal recovery and introduce a multi-level variant for greater computational efficiency. We illustrate the method with two concrete imaging examples: the deconvolution of 3-D fluorescence micrographs, and the reconstruction of magnetic resonance images from arbitrary (non-uniform) k-space trajectories.

In the second part, we show how to design new wavelet bases that are better matched to the directional characteristics of images. We introduce a general operator-based framework for the construction of steerable wavelets in any number of dimensions. This approach gives access to a broad class of steerable wavelets that are self-reversible and linearly parameterized by a matrix of shaping coefficients; it extends upon Simoncelli’s steerable pyramid by providing much greater wavelet diversity. The basic version of the transform (higher-order Riesz wavelets) extracts the partial derivatives of order N of the signal (e.g., gradient or Hessian). We also introduce a signal-adapted design, which yields a PCA-like tight wavelet frame. We illustrate the capabilities of these new steerable wavelets for image analysis and processing (denoising).

Slide of the presentation (PDF 17.3 Mb)

MS/PhD Admissions in Biomedical Engineering 2011 IIT Madras

IIT Madras offers MS/PhD courses in Biomedical Engineering under the applied mechanics department.

Research areas at IIT Madras

Biomaterials, Image and Signal Processing, Speech Signal Processing, Ultrasound and Laser instrumentation in Medicine, Biomechanics, Rehabilitation Engineering, Evoked Response and Functional Electrical Stimulation.

Eligibility Criteria

Biomedical Engineering area: Bachelor’s degree in Engineering or Master’s
degree in Science with Mathematics as optional subject and aptitude for
research. MBBS candidates with Mathematics in +2 and having 2 years
research/teaching experience may also apply for M.S sponsored
programme in the area of Biomedical Engineering.

Financial assistance

Basic & Detailed Tutorial in CT & MRI for Biomedical Beginners

A extensive tutorial in CT & MRI which will cover all the aspect required by an engineer who has just entered Biomedical Imaging field and wants to explore new avenues of the field

This tutorial will help you in getting familiarized with the operation of CT & MRI

In the first, the terms “CT” (computed tomography) and “CAT” (computer axial tomography; also used: computer assisted tomography) are the usual way to refer to the method involved when x-rays are used to generate the means by which the “target” is examined. (Also in common use is a process connotation: “CATscan“.) When other forms of radiation or waves are involved, specialized terms such as “PET” or “SPECT“, two techniques in emission topography, are applied (some of these are defined by the nature of the signal carrier). Thus, there are many other specialized uses of tomographic techniques, such as in Magnetic Resonance Imaging (MRI), optical tomography, acoustical tomography, and processing of Synthetic Aperture Radar (SAR). As an aside, we now show one example of a geophysical tomography application – specifically, seismic tomography – in which the surface of the subduction zone running south of Japan into the Kurile Islands has been reconstructed from seismic refraction data.

Important to an in-depth understanding of tomography are underlying physics and mathematical operations, which are pertinent to the methods of Signal Processing. This complex subject will not be treated here (an extensive search of the Internet failed to find a good review); intrinsic to some types of tomography are such concepts as image formation, wave transformation, interferometry, and Fast Fourier Transforms.

Three Internet Sites that cover some general aspects of CAT are at: (1), (2), and (3).

We will explain the operating principles by reviewing how a typical CATscan is conducted. As a general statement, the advantage of this and other medical tomographic methods is an improved delineation and differentiation of the various soft tissue organs in humans and other mammals. Thus, x-rays in this mode are usually able to separate these organs discretely, especially when absorbing chemicals (e.g., barium compounds) or dyes are used. We begin by showing a typical CAT Scanner in an examining room:

New Algorithm for Quantification of High Frequency and Non-deterministic events of Heart

Normal ECG
Image via Wikipedia

Background: Heart signals represent an important way to evaluate cardiovascular function and often what is desired is to quantify the level of some signal of interest against the louder backdrop of the beating of the heart itself. An example of this type of application is the quantification of cavitation in mechanical heart valve patients.

Methods: An algorithm is presented for the quantification of high-frequency, non-deterministic events such as cavitation from recorded signals. A closed-form mathematical analysis of the algorithm investigates its capabilities. The algorithm is implemented on real heart signals to investigate usability and implementation issues. Improvements are suggested to the base algorithm including aligning heart sounds, and the implementation of the Short-Time Fourier Transform to study the time evolution of the energy in the signal.

BIOMEDICAL ENGINEER SIGNAL PROCESSING R&D JOB IN BANGALORE

Experience:2 – 7 Years

Location:

Bengaluru/Bangalore

Education:UG – Any Graduate – Any Specialization PG – Any PG Course – Any Specialization

Industry Type:Medical/ Healthcare/Hospital

Posted Date:11 Jan

Desired Candidate Profile

Strong publication record in the relevant field

Expertise in methods and technologies for signal analysis using signal processing and pattern recognition techniques with particular focus on biomedical signals

Job Description

Propose novel methods for signal analysis especially biomedical signals, requiring an in-depth knowledge of signal processing and pattern recognition techniques
• Implementation of proposed methods to demonstrate proof of concept